PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s00410.1
Common NameLR48_Vigan06g120700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 193aa    MW: 21489.6 Da    PI: 8.9968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s00410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41e-1217107298
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+  +  +l++g +++pk+f++++gg       l l+ ++g +We+    +k + + ++l kGWkeF     L  g  v+Fk++++ +  l 
  Vang0005s00410.1  17 FKII-RDTTLQEGKIMIPKEFTQKYGGRL--LNPLFLKVPNGIEWELCW--TKDGVGnVWLDKGWKEFFTYYSLGYGHLVTFKYQQTCT--LE 102
                       5544.677888899***********9884..456************999..5555555*************************987544..47 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v++++
  Vang0005s00410.1 103 VQIYN 107
                       77765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.51E-1713109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1813109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-1514107No hitNo description
PROSITE profilePS5086312.12515109IPR003340B3 DNA binding domain
SMARTSM010196.3E-1116109IPR003340B3 DNA binding domain
PfamPF023622.3E-1016107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTSCPGIDPL PSEFCFFKII RDTTLQEGKI MIPKEFTQKY GGRLLNPLFL KVPNGIEWEL  60
CWTKDGVGNV WLDKGWKEFF TYYSLGYGHL VTFKYQQTCT LEVQIYNTNV VQRNYLSNNA  120
QNNFSNVSFE VAPTSPSLPG PSKKPRTHPS GVDGQSFSLP HVQVKVDQLQ GNSSGAIRSK  180
TPLSCVKACK GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513154.18e-92PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0L9UT491e-142A0A0L9UT49_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-16B3 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]